API Reference¶
Subpackages¶
- Panoptica
- Submodules
- panoptica.instance_approximator module
- panoptica.instance_evaluator module
- panoptica.instance_matcher module
- panoptica.panoptica_aggregator module
- panoptica.panoptica_evaluator module
- panoptica.panoptica_result module
- panoptica.panoptica_statistics module
- Metrics
- Submodules
- panoptica.metrics.assd module
- panoptica.metrics.cldice module
- panoptica.metrics.dice module
- panoptica.metrics.iou module
- panoptica.metrics.metrics module
- panoptica.metrics.relative_volume_difference module
- Utils
- Submodules
- panoptica.utils.citation_reminder module
- panoptica.utils.config module
SupportsConfigSupportsConfig.load_from_config()SupportsConfig.load_from_config_name()SupportsConfig.save_to_config()SupportsConfig.save_to_config_by_name()SupportsConfig.to_yaml()SupportsConfig.from_yaml()SupportsConfig._register_permanently()SupportsConfig._yaml_repr()SupportsConfig.from_yaml()SupportsConfig.load_from_config()SupportsConfig.save_to_config()SupportsConfig.to_yaml()
_load_from_config()_load_from_config_by_name()_load_from_config_by_path()_load_yaml()_register_class_to_yaml()_register_helper_classes()_save_to_config()_save_to_config_by_name()_save_to_config_by_path()_save_yaml()
- panoptica.utils.constants module
CCABackend_Enum_Compare_Enum_Compare.__eq__()_Enum_Compare.__str__()_Enum_Compare.__repr__()_Enum_Compare.load_from_config()_Enum_Compare.load_from_config_name()_Enum_Compare.save_to_config()_Enum_Compare.to_yaml()_Enum_Compare.from_yaml()_Enum_Compare._register_permanently()_Enum_Compare.from_yaml()_Enum_Compare.load_from_config()_Enum_Compare.save_to_config()_Enum_Compare.to_yaml()
- panoptica.utils.edge_case_handling module
EdgeCaseHandlerEdgeCaseHandler.listmetric_zeroTP_handlingEdgeCaseHandler.empty_list_stdEdgeCaseHandler.handle_zero_tp()EdgeCaseHandler.listmetric_zeroTP_handling()EdgeCaseHandler.get_metric_zero_tp_handle()EdgeCaseHandler.handle_empty_list_std()EdgeCaseHandler._yaml_repr()EdgeCaseHandler._yaml_repr()EdgeCaseHandler.get_metric_zero_tp_handle()EdgeCaseHandler.handle_empty_list_std()EdgeCaseHandler.handle_zero_tp()EdgeCaseHandler.listmetric_zeroTP_handling
EdgeCaseResultEdgeCaseZeroTPMetricZeroTPEdgeCaseHandlingMetricZeroTPEdgeCaseHandling.default_resultMetricZeroTPEdgeCaseHandling.no_instances_resultMetricZeroTPEdgeCaseHandling.empty_prediction_resultMetricZeroTPEdgeCaseHandling.empty_reference_resultMetricZeroTPEdgeCaseHandling.normalMetricZeroTPEdgeCaseHandling.__call__()MetricZeroTPEdgeCaseHandling.__eq__()MetricZeroTPEdgeCaseHandling.__str__()MetricZeroTPEdgeCaseHandling._yaml_repr()MetricZeroTPEdgeCaseHandling._yaml_repr()
- panoptica.utils.filepath module
- panoptica.utils.instancelabelmap module
InstanceLabelMapInstanceLabelMap.labelmapInstanceLabelMap.add_labelmap_entry()InstanceLabelMap.get_pred_labels_matched_to_ref()InstanceLabelMap.contains_pred()InstanceLabelMap.contains_ref()InstanceLabelMap.contains_and()InstanceLabelMap.contains_or()InstanceLabelMap.get_one_to_one_dictionary()InstanceLabelMap.__labelmapInstanceLabelMap.add_labelmap_entry()InstanceLabelMap.contains_and()InstanceLabelMap.contains_or()InstanceLabelMap.contains_pred()InstanceLabelMap.contains_ref()InstanceLabelMap.get_one_to_one_dictionary()InstanceLabelMap.get_pred_labels_matched_to_ref()InstanceLabelMap.items()InstanceLabelMap.keys()InstanceLabelMap.values()
- panoptica.utils.label_group module
- panoptica.utils.numpy_utils module
- panoptica.utils.parallel_processing module
- panoptica.utils.processing_pair module
EvaluateInstancePairEvaluateInstancePair.reference_arrEvaluateInstancePair.prediction_arrEvaluateInstancePair.n_pred_instancesEvaluateInstancePair.n_ref_instancesEvaluateInstancePair.tpEvaluateInstancePair.list_metricsEvaluateInstancePair.instance_voxel_count_matched_refEvaluateInstancePair.instance_volume_matched_refEvaluateInstancePair.instance_voxel_count_unmatched_refEvaluateInstancePair.instance_volume_unmatched_refEvaluateInstancePair.instance_volume_matched_refEvaluateInstancePair.instance_volume_unmatched_refEvaluateInstancePair.instance_voxel_count_matched_refEvaluateInstancePair.instance_voxel_count_unmatched_refEvaluateInstancePair.list_metricsEvaluateInstancePair.n_pred_instancesEvaluateInstancePair.n_ref_instancesEvaluateInstancePair.prediction_arrEvaluateInstancePair.reference_arrEvaluateInstancePair.tp
InputTypeIntermediateStepsDataIntermediateStepsData.original_inputIntermediateStepsData._intermediatestepsIntermediateStepsData.add_intermediate_arr_data()IntermediateStepsData.add_intermediate_data()IntermediateStepsData.original_prediction_arrIntermediateStepsData.original_reference_arrIntermediateStepsData.prediction_arr()IntermediateStepsData.reference_arr()
MatchedInstancePairMatchedInstancePair.missed_reference_labelsMatchedInstancePair.missed_prediction_labelsMatchedInstancePair.matched_instancesMatchedInstancePair._abc_implMatchedInstancePair.copy()MatchedInstancePair.matched_instancesMatchedInstancePair.missed_prediction_labelsMatchedInstancePair.missed_reference_labelsMatchedInstancePair.n_matched_instances
SemanticPairUnmatchedInstancePair_ProcessingPair_ProcessingPair.n_dim_ProcessingPair.crop_ProcessingPair.is_cropped_ProcessingPair.uncropped_shape_ProcessingPair._abc_impl_ProcessingPair._original_n_preds_ProcessingPair._original_n_refs_ProcessingPair.copy()_ProcessingPair.crop_data()_ProcessingPair.get_metadata()_ProcessingPair.n_dim_ProcessingPair.pred_labels_ProcessingPair.prediction_arr_ProcessingPair.ref_labels_ProcessingPair.reference_arr_ProcessingPair.set_dtype()_ProcessingPair.uncrop_data()
_ProcessingPairInstanced_ProcessingPairInstanced.n_pred_instances_ProcessingPairInstanced.n_ref_instances_ProcessingPairInstanced._abc_impl_ProcessingPairInstanced._original_n_preds_ProcessingPairInstanced._original_n_refs_ProcessingPairInstanced.copy()_ProcessingPairInstanced.n_pred_instances_ProcessingPairInstanced.n_ref_instances
_check_array_integrity()
- panoptica.utils.segmentation_class module
- panoptica.utils.timing module