Index

_

__surface_distances() (in module panoptica.metrics.assd) _abc_impl (panoptica.instance_approximator.ConnectedComponentsInstanceApproximator attribute) (panoptica.instance_approximator.InstanceApproximator attribute) (panoptica.instance_matcher.DesperateMarriageMatching attribute) (panoptica.instance_matcher.InstanceMatchingAlgorithm attribute) (panoptica.instance_matcher.MatchUntilConvergenceMatching attribute) (panoptica.instance_matcher.MaximizeMergeMatching attribute) (panoptica.instance_matcher.NaiveThresholdMatching attribute) _approximate_instances() (panoptica.instance_approximator.ConnectedComponentsInstanceApproximator method) (panoptica.instance_approximator.InstanceApproximator method) _average_surface_distance() (in module panoptica.metrics.assd) _average_symmetric_surface_distance() (in module panoptica.metrics.assd) _compute_dice_coefficient() (in module panoptica.metrics.dice)

_compute_instance_average_symmetric_surface_distance() (in module panoptica.metrics.assd) _compute_instance_iou() (in module panoptica.metrics.iou) _compute_instance_volumetric_dice() (in module panoptica.metrics.dice) _compute_iou() (in module panoptica.metrics.iou) _count_unique_without_zeros() (in module panoptica.utils.numpy_utils) _distance_transform_edt() (in module panoptica.metrics.assd) _Enum_Compare (class in panoptica.utils.constants) _evaluate_instance() (in module panoptica.instance_evaluator) _get_bbox_nd() (in module panoptica.utils.numpy_utils) _get_smallest_fitting_uint() (in module panoptica.utils.numpy_utils) _match_instances() (panoptica.instance_matcher.InstanceMatchingAlgorithm method) (panoptica.instance_matcher.MaximizeMergeMatching method) (panoptica.instance_matcher.NaiveThresholdMatching method) _unique_without_zeros() (in module panoptica.utils.numpy_utils)

A

approximate_instances() (panoptica.instance_approximator.InstanceApproximator method)

C

cc3d (panoptica.utils.constants.CCABackend attribute) cca_backend (panoptica.instance_approximator.ConnectedComponentsInstanceApproximator attribute)

CCABackend (class in panoptica.utils.constants) ConnectedComponentsInstanceApproximator (class in panoptica.instance_approximator)

D

DesperateMarriageMatching (class in panoptica.instance_matcher)

E

evaluate_matched_instance() (in module panoptica.instance_evaluator)

I

InstanceApproximator (class in panoptica.instance_approximator)

InstanceMatchingAlgorithm (class in panoptica.instance_matcher) iou_threshold (panoptica.instance_matcher.NaiveThresholdMatching attribute)

M

map_instance_labels() (in module panoptica.instance_matcher) match_instances() (panoptica.instance_matcher.InstanceMatchingAlgorithm method) MatchUntilConvergenceMatching (class in panoptica.instance_matcher) MaximizeMergeMatching (class in panoptica.instance_matcher) module panoptica.instance_approximator panoptica.instance_evaluator panoptica.instance_matcher panoptica.metrics.assd panoptica.metrics.dice panoptica.metrics.iou panoptica.utils.constants panoptica.utils.numpy_utils

N

NaiveThresholdMatching (class in panoptica.instance_matcher) new_combination_score() (panoptica.instance_matcher.MaximizeMergeMatching method)

None (panoptica.instance_approximator.InstanceApproximator attribute) (panoptica.instance_matcher.InstanceMatchingAlgorithm attribute)

P

panoptica.instance_approximator module panoptica.instance_evaluator module panoptica.instance_matcher module panoptica.metrics.assd module

panoptica.metrics.dice module panoptica.metrics.iou module panoptica.utils.constants module panoptica.utils.numpy_utils module

S

scipy (panoptica.utils.constants.CCABackend attribute)